实用医学杂志 ›› 2022, Vol. 38 ›› Issue (22): 2838-2844.doi: 10.3969/j.issn.1006⁃5725.2022.22.014

• 药物与临床 • 上一篇    下一篇

基于疾病基因表达谱和药物转录组的抗高尿酸血症药物“重定位”

逄成章1 刘文彬2 金小宝1    

  1. 1 广东药科大学生命科学与生物制药学院(广州 510006);2 广东省生物活性药物研究重点实验室(广州 511436)

  • 出版日期:2022-11-25 发布日期:2022-11-25
  • 通讯作者: 金小宝 E⁃mail:jinxf2001@163.com
  • 基金资助:
    广东省医学科学技术研究基金资助项目(编号:A2022069);广东省中医药局中医药科研基金资助项目(编号:20232086)

“Relocalization”of anti⁃hyperuricemia drugs based on disease gene expression Profile and Drug transcrip⁃ tome

PANG Chengzhang*,LIU Wenbin,JIN Xiaobao   

  1. School of Life Sciences and Biopharmaceutics,Guangdong Pharmaceutical University,Guangzhou 510006,China

  • Online:2022-11-25 Published:2022-11-25
  • Contact: JIN Xiaobao E⁃mail:jinxf2001@163.com

摘要:

目的 采用疾病基因表达谱和药物转录组相结合的老药新用策略,从老药中筛选具有抗高 尿酸血症的药物。方法 通过高尿酸血症(hyperuricemia,HUA)转录组数据库筛选 HUA 差异表达基因, 使用DAVID数据库与STRING平台对差异基因进行筛选与分析。通过Connectivity Map数据库从候选药物中 筛选预测抗HUA药物,选择富集分数较高的药物与差异表达核心靶点,利用SwissDock平台进行分子对接。 CCK⁃8 法检测候选抗 HUA 药物对 HK⁃2 细胞活力的影响,验证候选药物对 HUA 细胞模型的黄嘌呤氧化酶 活性和尿酸浓度的影响。结果 HUA 转录组数据库中,获得 1 492 个差异基因,其中下调基因 810 个, 上调基因 682 个,差异基因涉及 HDASC deacetylate histones、IL⁃7、UB⁃specific processing proteases 等通路;通 Connectivity Map 数据库预测 15 个药物具有抗 HUA 潜力,分子对接表明阿维菌素与核心靶点 IL⁃1β TNF、CXCL2 IL⁃6 的结合能分别为-7.68、-7.97、-6.25、-6.73 kcal/mol;细胞实验表明,12.5 ~ 100 μg/mL 药物浓度范围内阿维菌素具有良好的细胞安全性、抑制黄嘌呤氧化酶活性和降低尿酸作用(P < 0.05)。 结论 通过疾病基因表达谱和药物转录组数据相结合策略发现阿维菌素具有抗高尿酸潜力。

关键词:

阿维菌素, 疾病基因表达谱, 药物转录组, 高尿酸血症, 分子对接

Abstract:

Objective Drugs with anti⁃hyperuricemia were screened from old drugs by the strategy of new use of old drugs based on disease gene expression profile and drug transcriptome. Methods Hyperuricemia (HUA)transcriptome database was used to screen hyperuricemia differentially expressed genes,and the DAVID database and STRING platform were used to screen and analyze the differentially expressed genes. The predicted anti⁃HUA drugs were screened from the old drugs by the Connectivity Map database,the drugs with high enrich⁃ ment fractions were selected and differentially expressed core targets,and the SwissDock platform was used for molecular docking. The CCK⁃8 assay was used to detect the effect of candidate anti⁃HUA drugs on HK⁃2 cell viability and to verify the effect of candidate drugs on xanthine oxidase activity and uric acid concentration in the HUA cell model. Results In the HUA transcriptome database,1 492 differential genes were obtained,including 810 down⁃ regulated genes and 682 up ⁃ regulated genes. The differential genes involved HDASC deacetylate histones,IL ⁃7 UB⁃specific processing proteases,and other pathways. The 15 drugs were predicted to have anti⁃HUA potential by the Connectivity Map database. Molecular docking showed that the binding energies of avermectin to the core targets IL⁃1β,TNF,CXCL2,and IL⁃6 were -7.68,-7.97,-6.25,and -6.73 kcal/mol,respectively. The results of cell experiments showed that avermectin had good cell safety,inhibited xanthine oxidase activity,and reduced uric acid in the concentration range of 12.5~100 μg/mL. Conclusions This present study found that the old drug abamectin has anti⁃hyperuric acid potential through a combination of disease gene expression profile and drug tran⁃ scriptome data.

Key words:

avermectin, disease gene expression profile, drug transcriptome, hyperuricemia, mo? lecular docking