实用医学杂志 ›› 2022, Vol. 38 ›› Issue (14): 1736-1742.doi: 10.3969/j.issn.1006⁃5725.2022.14.005

• 专题报道 • 上一篇    下一篇

基于生物信息学分析早期糖尿病肾病发病机制

 李英娜 董兰 刘婉珊 全林菲 何凤    

  1. 广州市第一人民医院肾内科(广州 510180)

  • 出版日期:2022-07-25 发布日期:2022-07-25
  • 通讯作者: 何凤 E⁃mail:eyhefeng@scut.edu.cn
  • 基金资助:
    广州市科技计划项目(编号:201904010069)

Pathogenesis of early diabetic nephropathy:A bioinformatics analysis

LI YingnaDONG Lan,LIU Wanshan QUAN Linfei,HE Feng.   

  1. Department of Nephrology,Guangzhou First People′s Hospital,Guangzhou 510180,China Corresponding author:HE Feng E⁃mail:eyhefeng@scut.edu.cn

  • Online:2022-07-25 Published:2022-07-25

摘要:

目的 利用生物信息学筛选分析早期糖尿病肾病的差异基因表达,探讨糖尿病肾病发病机 制并为其提供新的分子治疗靶点。方法 通过 GEO 数据库获取数据集 GSE142025 行生物信息学分析,筛选早期糖尿病肾病组(eDN 组)相对对照组(NC 组)差异表达基因。GSEA 分析差异表达基因的富集通路, 通过蛋白质相互网络(PPI)分析鉴定 HUB 基因。采用免疫组化和 RT⁃qPCR 检测目标基因在肾组织中的相 对表达水平。结果 P < 0.05 | |log2FC > 1 为标准,筛选得到 eDN 组有 1 859 个差异表达基因,其中有 1 063 个上调,有 796 个下调。GSEA 行差异基因的 KEGG 通路富集显示 eDN 组在JAK⁃STAT 通路”、“细胞 因子受体通路”、“趋化因子信号通路”、“细胞黏附分子通路”、“细胞外基质受体相互作用通路”等显著 上调。CCR2 作为 HUB 基因在 eDN 组中表达显著上调;免疫组化及 RT⁃qPCR 结果显示一致,eDN 组中 CCR2 相对表达水平明显高于 NC 组(均 P < 0.05)。结论 KEGG 分析功能富集主要显示炎症通路激活,而 CCR2 在早期糖尿病肾病的肾组织中表达显著上调,提示其可能在早期糖尿病肾病发生发展中起着重要 作用。

关键词:

糖尿病肾病, 生物信息学, CCR2, 炎症反应

Abstract:

Objective To analyze and explore the differential gene expression and pathogenesis of early diabetic nephropathy with bioinformatics analysis,and to explore the pathogenesis of diabetic nephropathy and provide new molecular therapeutic targets for it. Methods In this study,the data set GSE142025 was obtained from the GEO database for bioinformatics analysis,and the differentially expressed genes were screened in the early diabetic nephropathy group(eDN group)when compared with those in normal control group(NC group). The enrichment pathways of differentially expressed genes were analyzed by GSEA,and HUB genes were identified by protein interaction network(PPI)analysis. The relative expression levels of target genes in kidney tissue were detected by immunohistochemistry and RT ⁃qPCR. Results A total of 1,859 differentially expressed genes were screened using P < 0.05 and |log2FC| > 1 as the criteria in the eDN group. Among them,the expression of 1,063 was up ⁃ regulated and that of 796 down ⁃ regulated. The KEGG pathway enrichment of differential genes in GSEA showed that the eDN group weresignificantly up ⁃ regulated in the“JAK ⁃ STAT pathway”,“Cytokine receptor pathway”,“Chemokine signaling pathway”,“Cell adhesion molecule pathway”,and“Extracellular matrix receptor interaction”. As a HUB gene,the expression of CCR2 was significantly up⁃regulated in eDN;immunohistochemistry and RT⁃qPCR showed that the relative expression of CCR2 in eDN group was significantly higher than that in NC group(all P < 0.05). Conclusion KEGG analysis of functional enrichment mainly shows that the inflammatory pathway is activated,and the expression of CCR2 is significantly up ⁃ regulated in eDN kidney tissue,suggesting that it may play an important role in the occurrence and development of eDN.

Key words:

diabetic nephropathy, bioinformatics, CCR2, inflammation